PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.13G122500.1.p
Common NameGLYMA_13G122500, LOC100810414
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 139aa    MW: 15717.5 Da    PI: 5.0931
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.13G122500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.68.9e-201668156
                  AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56
                         ++y+GVr+++ +g+++AeIrdp     + +r++lg+f taeeAa+a+++a+ +++g+
  Glyma.13G122500.1.p 16 PRYRGVRRRP-WGKFAAEIRDPAR---HgARVWLGTFLTAEEAARAYDRAAYEMRGA 68
                         68********.**********943...24**************************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.98E-191676No hitNo description
PfamPF008471.8E-141667IPR001471AP2/ERF domain
SuperFamilySSF541713.07E-231776IPR016177DNA-binding domain
PROSITE profilePS5103224.6451775IPR001471AP2/ERF domain
SMARTSM003809.0E-351781IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-311777IPR001471AP2/ERF domain
PRINTSPR003673.7E-111829IPR001471AP2/ERF domain
PRINTSPR003673.7E-114157IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 139 aa     Download sequence    Send to blast
MEEESKEKKK DTKEEPRYRG VRRRPWGKFA AEIRDPARHG ARVWLGTFLT AEEAARAYDR  60
AAYEMRGALA VLNFPNEYPS CSSMNSSSTL APSSSSSNSM LKSDHGKQVI EFECLDDKLL  120
EDLLDCDDYA YEKDLPKN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-281875663ATERF1
3gcc_A1e-281875663ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003541348.14e-99PREDICTED: ethylene-responsive transcription factor ERF096-like
SwissprotQ9LTC59e-42ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A0B2SIT64e-99A0A0B2SIT6_GLYSO; Ethylene-responsive transcription factor ERF098
TrEMBLI1LYJ24e-99I1LYJ2_SOYBN; Uncharacterized protein
STRINGGLYMA13G18330.11e-98(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2236524
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.17e-24ERF family protein